SNP Profiles matching B 12.1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
1._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
2._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
3._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
4._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
5._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
6._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
7._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
8._PA_121_[PER]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
9._GC-05-011-1-11	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
10._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
11._B_12_/1_[POU]	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
12._GC-05-093-2-44	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT
13._RUQ_1541	_	GG	CG	CT	_	_	GT	_	_	_	_	CC	AG	_
14._RUQ_1541	CC	GG	CG	CT	TT	CC	GT	TT	CC	TT	AG	CC	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
1._B_12_/1_[POU]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
2._B_12_/1_[POU]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
3._B_12_/1_[POU]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
4._GC-05-093-2-44	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
5._GC-05-093-2-44	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
6._GC-05-093-2-44	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
7._GC-05-093-2-44	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
8._PA_121_[PER]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
9._GC-05-011-1-11	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
10._B_12_/1_[POU]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
11._B_12_/1_[POU]	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
12._GC-05-093-2-44	AA	GG	CT	TT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA
13._RUQ_1541	_	_	_	TT	GG	GT	_	CC	CC	GG	GT	CT	CC	AA
14._RUQ_1541	AA	GG	CT	CT	GG	GT	AA	CC	CC	GG	GT	CT	CC	AA

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
1._B_12_/1_[POU]	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
2._B_12_/1_[POU]	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
3._B_12_/1_[POU]	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
4._GC-05-093-2-44	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
5._GC-05-093-2-44	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
6._GC-05-093-2-44	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
7._GC-05-093-2-44	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
8._PA_121_[PER]	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
9._GC-05-011-1-11	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
10._B_12_/1_[POU]	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X
11._B_12_/1_[POU]	AG	TT	CC	AA	CC	AA	_	GT	CC	AA	GG	X_X	X_X	X_X
12._GC-05-093-2-44	AG	TT	CC	AA	CC	AA	_	GT	CC	AA	GG	X_X	X_X	X_X
13._RUQ_1541	_	TT	CC	AA	CC	AA	CT	GT	CC	_	_	X_X	X_X	X_X
14._RUQ_1541	AG	TT	CC	AA	CC	AA	CT	GT	CC	AA	GG	X_X	X_X	X_X

Input profile: B_12_/1_[POU]

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Mars Center for Cocoa Science, Brazil

Location: 5244 5

Dapeng Zhang, 2016

1._B_12_/1_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 1 > FP

Dapeng Zhang, 2016

2._B_12_/1_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 4

Dapeng Zhang, 2016

3._B_12_/1_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._B_12_/1_[POU] GC-05-093-2-44

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._PA_121_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._PA_121_[PER] GC-05-011-1-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

10._B_12_/1_[POU]

identical
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F461 T10

Dapeng Zhang, 2016

11._B_12_/1_[POU]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5244 3

Dapeng Zhang, 2016

12._B_12_/1_[POU] GC-05-093-2-44

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

13._B_12_/1_[POU] RUQ_1541

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25